species:   Rhsol
pid:       PID0557
parent:    Rhi-milR-67
paralog:   
locus:     KB317727.1:55054-55139
matures:   ['GAGCUGUUUUCGUACUUGUGGACU', 'GUCUGUUUGGCGACGAUGGCCGG']
srr:       SRR1994876
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram KB317727.1:55054-55139

0 out of bounds
8 alignments
8 proper strand
8 stranded perfect matches

       ***************************                **************************          
UAUCUUCUUCGAGCUGUUUUCGUACUUGUGGACUUCCCAAGUUAUUGGUAAUGUCUGUUUGGCGACGAUGGCCGGUGGCCCUUAUG
.....((.(((.((((((.((((......((((((.((((....)))).)).)))).....)))).))))))))).))........
----------GAGCUGUUUUCGUACUUGUGGACU---------------------------------------------------- l=24 a=1 c
----------------------------------------------------GUCUGUUUGGCGACGAUGGCCGG----------- l=23 a=0 c*
---------CGAGCUGUUUUCGUACUUGUGGACU---------------------------------------------------- l=25 a=4 ma
----------------------------------------------------GUCUGUUUGGCGACGAUGGCCGGU---------- l=24 a=0 ma*

----------------------------------------------------GUCUGUUUGGCGACGAUGGCC------------- l=21 a=1 
---------------------------------------------------UGUCUGUUUGGCGACGAUGGCC------------- l=22 a=1 
----------GAGCUGUUUUCGUACUUGUGGACU---------------------------------------------------- l=24 a=1 (c)
---------CGAGCUGUUUUCGUACUUGUGGACU---------------------------------------------------- l=25 a=4 (ma)
---CUUCUUCGAGCUGUUUUCGUACUUGUGGA------------------------------------------------------ l=29 a=1 

mb-01111
ax-1001001
ku-01
ss-101011101110
fn-111
